 Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 str. unknown | Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 str. unknown | 2492658 | ASM1227173v1 | GCA_012271735.1 | Import | - |
| Bat Hp-betacoronavirus/Zhejiang2013 str. unknown | Bat Hp-betacoronavirus/Zhejiang2013 str. unknown | 1541205 | ViralProj263036 | GCA_000926915.1 | Import | - |
| B. coronavirus CDPHE15/USA/2006 | Bat coronavirus CDPHE15/USA/2006 | 1384461 | ViralProj215863 | GCA_000913415.1 | Import | - |
| B. coronavirus HKU4-1 str. unknown | Bat coronavirus HKU4-1 str. unknown | 424359 | ViralProj18863 | GCA_000870505.1 | Import | - |
| B. coronavirus HKU5-1 str. unknown | Bat coronavirus HKU5-1 str. unknown | 424363 | ViralProj18865 | GCA_000873025.1 | Import | - |
| B. coronavirus HKU9-1 str. unknown | Bat coronavirus HKU9-1 str. unknown | 424367 | ViralProj18867 | GCA_000868045.1 | Import | - |
| B. whale coronavirus SW1 str. unknown | Beluga whale coronavirus SW1 str. unknown | 694015 | ViralProj29509 | GCA_000872845.1 | Import | - |
| Betacoronavirus England 1 str. unknown | Betacoronavirus England 1 str. unknown | 1263720 | ASM281619v1 | GCA_002816195.1 | Import | - |
| Betacoronavirus Erinaceus/VMC/DEU/2012 str. unknown | Betacoronavirus Erinaceus/VMC/DEU/2012 str. unknown | 1385427 | ViralProj226084 | GCA_000912235.1 | Import | - |
| Betacoronavirus Erinaceus/VMC/DEU/2012 str. unknown | Betacoronavirus Erinaceus/VMC/DEU/2012 str. unknown | 1385427 | ASM281617v1 | GCA_002816175.1 | Import | - |
| Betacoronavirus HKU24 str. unknown | Betacoronavirus HKU24 str. unknown | 1590370 | ViralProj271776 | GCA_000930095.1 | Import | - |
| B. coronavirus str. unknown | Bovine coronavirus str. unknown | 11128 | ViralProj15385 | GCA_000862505.1 | Import | - |
| BtMr-AlphaCoV/SAX2011 str. unknown | BtMr-AlphaCoV/SAX2011 str. unknown | 1503289 | ViralProj307859 | GCA_001503155.1 | Import | - |
| BtNv-AlphaCoV/SC2013 str. unknown | BtNv-AlphaCoV/SC2013 str. unknown | 1503291 | ViralProj307857 | GCA_001505415.1 | Import | - |
| BtRf-AlphaCoV/HuB2013 str. unknown | BtRf-AlphaCoV/HuB2013 str. unknown | 1503292 | ViralProj307856 | GCA_001504755.1 | Import | - |
| BtRf-AlphaCoV/YN2012 str. unknown | BtRf-AlphaCoV/YN2012 str. unknown | 1503293 | ViralProj307855 | GCA_001501755.1 | Import | - |
| B. coronavirus HKU11-934 str. unknown | Bulbul coronavirus HKU11-934 str. unknown | 572288 | ASM281621v1 | GCA_002816215.1 | Import | - |
| C. alphacoronavirus str. unknown | Camel alphacoronavirus str. unknown | 1699095 | ViralProj306529 | GCA_001500975.1 | Import | - |
| C. goose coronavirus str. unknown | Canada goose coronavirus str. unknown | 2569586 | ASM1227174v1 | GCA_012271745.1 | Import | - |
| C. moorhen coronavirus HKU21 str. unknown | Common moorhen coronavirus HKU21 str. unknown | 1159902 | ViralProj109281 | GCA_000896895.1 | Import | - |
| Coronavirus AcCoV-JC34 str. unknown | Coronavirus AcCoV-JC34 str. unknown | 1964806 | ViralProj390412 | GCA_002194405.1 | Import | - |
 D. virus 2 Thailand/16681/84 str. unknown | Dengue virus 2 Thailand/16681/84 str. unknown | 31634 | ViralProj20183 | GCA_000871845.1 | Import | - |
| D. coronavirus str. unknown | Duck coronavirus str. unknown | 300188 | ASM1227156v1 | GCA_012271565.1 | Import | - |
| F. infectious peritonitis virus str. unknown | Feline infectious peritonitis virus str. unknown | 11135 | ViralProj15097 | GCA_000856025.1 | Import | - |
| F. coronavirus str. unknown | Ferret coronavirus str. unknown | 1264898 | ASM397188v1 | GCA_003971885.1 | Import | - |
| F. coronavirus str. unknown | Ferret coronavirus str. unknown | 1264898 | ViralProj325258 | GCA_001661775.1 | Import | - |
| Hepatitis C virus subtype 1a str. unknown | Hepatitis C virus subtype 1a str. unknown | 31646 | ViralProj15432 | GCA_000861845.1 | Import | - |
| H. adenovirus B3 str. unknown | Human adenovirus B3 str. unknown | 45659 | ViralProj31177 | GCA_000880515.1 | Import | - |
| H. betacoronavirus 2c EMC/2012 str. unknown | Human betacoronavirus 2c EMC/2012 str. unknown | 1235996 | ViralProj183710 | GCA_000901155.1 | Import | - |
| H. coronavirus 229E str. unknown | Human coronavirus 229E str. unknown | 11137 | ViralProj14913 | GCA_000853505.1 | Import | - |
| H. coronavirus NL63 str. unknown | Human coronavirus NL63 str. unknown | 277944 | ViralProj14960 | GCA_000853865.1 | Import | - |
| H. coronavirus OC43 str. unknown | Human coronavirus OC43 str. unknown | 31631 | ASM397232v1 | GCA_003972325.1 | Import | - |
| H. immunodeficiency virus 1 str. unknown | Human immunodeficiency virus 1 str. unknown | 11676 | ViralProj15476 | GCA_000864765.1 | Import | - |
| H. immunodeficiency virus 2 str. unknown | Human immunodeficiency virus 2 str. unknown | 11709 | ASM310463v1 | GCA_003104635.1 | Import | - |
| H. immunodeficiency virus str. unknown | Human immunodeficiency virus str. unknown | 12721 | ASM310259v1 | GCA_003102595.1 | Import | - |
| H. poliovirus 1 Mahoney str. unknown | Human poliovirus 1 Mahoney str. unknown | 12081 | ViralProj15288 | GCA_000861165.1 | Import | - |
| I. bronchitis virus str. unknown | Infectious bronchitis virus str. unknown | 11120 | ViralProj15303 | GCA_000862965.1 | Import | - |
| I. bronchitis virus str. unknown | Infectious bronchitis virus str. unknown | 11120 | ASM1227157v1 | GCA_012271575.1 | Import | - |
| Influenza A virus (A/England/343/2010(H1N1)) | Influenza A virus (A/England/343/2010(H1N1)) | 1645846 | A_England_343_2010 | GCA_900695555.1 | Import | - |
| J. encephalitis virus str. unknown | Japanese encephalitis virus str. unknown | 11072 | ViralProj15310 | GCA_000862145.1 | Import | - |
| Lucheng R. rat coronavirus str. unknown | Lucheng Rn rat coronavirus str. unknown | 1508224 | ViralProj361952 | GCA_001962315.1 | Import | - |
| Magpie-robin coronavirus HKU18 str. unknown | Magpie-robin coronavirus HKU18 str. unknown | 1159903 | ViralProj109275 | GCA_000894435.1 | Import | - |
| M. bat coronavirus 1 str. unknown | Miniopterus bat coronavirus 1 str. unknown | 694000 | ViralProj29247 | GCA_000879255.1 | Import | - |
| M. bat coronavirus HKU8 str. unknown | Miniopterus bat coronavirus HKU8 str. unknown | 694001 | ViralProj29245 | GCA_000879875.1 | Import | - |
| M. coronavirus strain WD1127 str. unknown | Mink coronavirus strain WD1127 str. unknown | 766791 | ViralProj241029 | GCA_000919475.1 | Import | - |
| M. coronavirus HKU13-3514 str. unknown | Munia coronavirus HKU13-3514 str. unknown | 572289 | ViralProj32703 | GCA_000880835.1 | Import | - |
| M. hepatitis virus str. unknown | Murine hepatitis virus str. unknown | 11138 | ViralProj15350 | GCA_000862345.1 | Import | - |
| M. hepatitis virus str. unknown | Murine hepatitis virus str. unknown | 11138 | ASM397178v1 | GCA_003971785.1 | Import | - |
| NL63-related bat coronavirus str. unknown | NL63-related bat coronavirus str. unknown | 1920748 | ASM397206v1 | GCA_003972065.1 | Import | - |
| NL63-related bat coronavirus str. unknown | NL63-related bat coronavirus str. unknown | 1920748 | ViralProj357487 | GCA_001904885.1 | Import | - |
| N. heron coronavirus HKU19 str. unknown | Night heron coronavirus HKU19 str. unknown | 1159904 | ViralProj109277 | GCA_000896035.1 | Import | - |
| P. coronavirus HKU15 str. unknown | Porcine coronavirus HKU15 str. unknown | 1159905 | ASM281623v1 | GCA_002816235.1 | Import | - |
| P. coronavirus HKU15 str. unknown | Porcine coronavirus HKU15 str. unknown | 1159905 | ViralProj109271 | GCA_000895395.2 | Import | - |
| P. epidemic diarrhea virus str. unknown | Porcine epidemic diarrhea virus str. unknown | 28295 | ViralProj14739 | GCA_000848685.1 | Import | - |
| Rabbit coronavirus HKU14 str. unknown (GCA_000896935) | Rabbit coronavirus HKU14 str. unknown | 1160968 | ViralProj157249 | GCA_000896935.1 | Import | - |
| R. coronavirus Parker str. unknown | Rat coronavirus Parker str. unknown | 502102 | ViralProj39313 | GCA_000886515.1 | Import | - |
| R. bat coronavirus HKU2 str. unknown | Rhinolophus bat coronavirus HKU2 str. unknown | 693998 | ViralProj27911 | GCA_000875645.1 | Import | - |
| R. bat coronavirus HKU10 str. unknown | Rousettus bat coronavirus HKU10 str. unknown | 1241933 | ViralProj177902 | GCA_000899495.1 | Import | - |
| R. bat coronavirus str. unknown | Rousettus bat coronavirus str. unknown | 1892416 | ViralProj342647 | GCA_001725835.1 | Import | - |
| SARS coronavirus Tor2 str. unknown (GCA_000864885) | SARS coronavirus Tor2 str. unknown | 227984 | ViralProj15500 | GCA_000864885.1 | Import | - |
 SARS-CoV-2 | Severe acute respiratory syndrome coronavirus 2 | 2697049 | ASM985889v3 | GCA_009858895.3 | Full genebuild | Y |
| S. bat coronavirus 512 str. unknown | Scotophilus bat coronavirus 512 str. unknown | 693999 | ViralProj20135 | GCA_000870985.1 | Import | - |
| S. acute respiratory syndrome-related coronavirus str. unknown | Severe acute respiratory syndrome-related coronavirus str. unknown | 694009 | ViralProj15500 | GCA_000864885.1 | Import | - |
| S. coronavirus HKU17 str. unknown | Sparrow coronavirus HKU17 str. unknown | 1159906 | ViralProj17048 | GCA_000868165.1 | Import | - |
| S. enteric coronavirus str. unknown | Swine enteric coronavirus str. unknown | 1766554 | ViralProj307783 | GCA_001501415.1 | Import | - |
| T. coronavirus HKU12-600 str. unknown | Thrush coronavirus HKU12-600 str. unknown | 572290 | ViralProj32701 | GCA_000883335.1 | Import | - |
| T. gastroenteritis virus str. unknown | Transmissible gastroenteritis virus str. unknown | 11149 | ASM298599v1 | GCA_002985995.1 | Import | - |
| T. coronavirus str. unknown | Turkey coronavirus str. unknown | 11152 | ViralProj30039 | GCA_000880055.1 | Import | - |
| Wencheng S. shrew coronavirus str. unknown | Wencheng Sm shrew coronavirus str. unknown | 1508228 | ViralProj394320 | GCA_002219865.1 | Import | - |
| Wencheng S. shrew coronavirus str. unknown | Wencheng Sm shrew coronavirus str. unknown | 1508228 | ASM1227163v1 | GCA_012271635.1 | Import | - |
| West N. virus str. unknown | West Nile virus str. unknown | 11082 | ViralProj15431 | GCA_000861085.1 | Import | - |
| White-eye coronavirus HKU16 str. unknown | White-eye coronavirus HKU16 str. unknown | 1159907 | ViralProj109273 | GCA_000896875.1 | Import | - |
| W. coronavirus HKU20 str. unknown | Wigeon coronavirus HKU20 str. unknown | 1159908 | ViralProj109279 | GCA_000895415.1 | Import | - |
