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  • Table of Contents

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  • Home
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  • Table of Contents

Table of Contents

Using this website

  • Control Panel
  • Find a Data Display
  • Adding Custom Tracks
    • BED File Format
    • Large File Formats
    • Pairwise Interactions File Formats
    • GFF/GTF File Format
    • GFF3 File Format
    • PSL File Format
    • Variation File Format
    • WIG File Format
    • Coordinate Systems for custom tracks
  • Track Hubs
    • Adding Track Hubs
    • Track Hub Support in Ensembl
  • Tutorials
  • Glossary
  • Supported browsers

About the Ensembl Project

  • Species List
  • Release Cycle
  • Scientific Publications
  • Workshops
    • Geek for a Week
  • Collaborations
  • Contact Us
    • Mailing Lists
  • Legal
    • Browser Genome Release Agreement
    • Disclaimer
    • Ensembl Image Reuse
    • Ensembl name and logo policy
    • Software Licence
  • Code of Conduct
  • Acknowledgements
  • Job Vacancies
  • Credits for species images
  • Projects using Ensembl
  • Scientific Advisory Board

Annotation & Prediction

Accessing Ensembl Data

  • Exporting data via website
  • API data access
  • FTP Download
    • Downloading with rsync

API & Software

  • Ensembl Tools
    • Ensembl Variant Effect Predictor (VEP)
    • Variant Simulator
    • VCF to PED Converter
  • API Documentation
    • API Installation
    • API Installation - Git
    • API Registry
    • Code versioning scheme
    • Debugging Ensembl API Connections
    • Core databases and API
    • Compara database and API
    • Variation database and API
    • Regulation Database and API
    • General instructions for the Perl API
  • Doxygen Perl documentation
  • DAS (Distributed Annotation System)
  • eHive production system
  • Web code
    • Linking in to Ensembl
    • Installing an Ensembl website
    • Basic customisation
    • Web code development

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